Automatic image alignment transformations based on manually placed reference features


I am trying to trichrome film, which is the process of taking 3 different colored images, and then combining them into a final colored image. This is a relatively common practice, but I am running into one really big issue, which is that I cannot get my three images perfectly aligned, due to slight shifts in the camera, bending of the film when scanned, and other problems, my best image, looks like this:

Trichrome image showing inaccurate alignment, and other issues

The color blotches are my fault while developing, but the colored fringes around everything, are due to being slightly off in the alignment, because the images are slightly warped. So I need a way to warp the images back to at least the same shape. I would prefer if I could manually select points of features to align, but if there is a suitably accurate automated way to do that, it would be equally as sufficient.



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